FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958980

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958980
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522034
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11170.213970737538168No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8550.16378243562679826No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC8510.16301620200983077No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC8410.16110061796741207No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7990.1530551649892536No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA7500.14366880318140196No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG7180.13753893424566216No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6880.13179218211840607No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT6690.12815257243781056No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAG6410.12278893711903822No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT6330.12125646988510327No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5930.11359413371542848No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5870.11244478328997728No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5830.11167854967300979No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA5800.1111038744602842No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5620.10765582318393054No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)