FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958989

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958989
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences548936
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25130.45779471559526064No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20590.37508926359357014No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19580.3566900330821808No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18320.3337365375927248No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12090.22024425433930364No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11410.20785665359896233No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8900.1621318332191731No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7590.1382674847341038No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6750.12296515440779981No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6410.11677135403762916No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5730.10438375329728784No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5590.10183336490957051No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)