FastQCFastQC Report
Sun 21 May 2023
EGAF00007958995

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958995
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533405
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG79291.4864877532081628No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28140.52755410991648No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20460.3835734573166731No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12690.23790553144421217No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12010.22515724449527094No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11060.20734713772836774No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT7340.13760650912533628No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5670.10629821617720119No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5570.10442346809647453No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)