FastQCFastQC Report
Sun 21 May 2023
EGAF00007958997

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958997
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497348
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG82211.6529673387648085No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30810.6194857524308934No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17190.34563323869805446No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16960.34100871019889495No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG14330.28812823214328803No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14300.2875250327738324No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9530.19161633303039322No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9160.1841768741404409No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8980.18055767792370733No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8760.176134215881033No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8560.17211288675132905No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6330.12727506695513No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5530.11118975043631421No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5380.10817375358903623No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5230.10515775674175828No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5190.1043534909158175No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)