FastQCFastQC Report
Wed 31 May 2023
EGAF00007959010

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959010
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492821
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11670.2367999740270808No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11630.23598832030290914No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10500.21305910259505986No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8520.17288224324856286No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7390.14995302554071355No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6280.12742963469495008No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5980.12134223176366267No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5910.11992183774636228No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5710.11586356912550398No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5610.11383443481507484No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5450.1105878199183882No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5280.10713829159065867No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5120.10389167669397205No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4990.10125380209041415No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)