FastQCFastQC Report
Wed 31 May 2023
EGAF00007959011

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959011
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492821
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26600.5397497265741517No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24300.4930796374342814No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12350.250598087337999No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11780.2390320217685529No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11700.23740871432020955No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11050.22421934130242016No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9590.19459398037015468No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6320.12824128841912175No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6220.1262121541086926No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6210.1260092406776497No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6150.1247917600913922No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5950.12073349147053393No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5470.11099364678047405No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5330.10815285874587324No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)