FastQCFastQC Report
Wed 31 May 2023
EGAF00007959013

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959013
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462082
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG75401.6317450149540558No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22490.486710151012158No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10960.23718733904371953No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10650.23047857306711794No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10370.22441904250760686No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10280.22247133625633544No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8780.1900095654018118No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5920.12811578897252002No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5850.12660090633264226No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5610.12140702299591848No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5420.11729519868767882No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5120.11080284451677408No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5040.10907155007119948No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4880.1056089611800503No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)