FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007959025

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959025
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439665
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25300.5754381176577622No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13960.3175144712451526No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12020.2733899673615139No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC9310.21175212946220417No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5500.12509524296907873No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5420.1232756757986194No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5280.12009143325031559No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG5200.11827186607985625No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5140.11690719070201178No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4910.11167593508694121No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4670.10621723357556322No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4460.10144086975310748No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)