FastQCFastQC Report
Sun 21 May 2023
EGAF00007959026

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959026
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405740
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10700.2637156799921132No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG8710.21466949277862668No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6380.15724355498595158No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5110.1259427219401587No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5020.12372455266919703No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4720.11633065509932469No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4680.11534480209000839No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4380.10795090452013605No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT4310.10622566175383251No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)