FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959027

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959027
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405740
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55601.3703356829496722No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12610.310790161186967No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11430.28170749741213585No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC8870.21861290481589193No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5230.12890028096810766No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5050.12446394242618425No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4820.11879528762261547No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4810.11854882437028638No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4770.11756297136097008No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4700.11583772859466654No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4490.11066200029575592No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG4470.11016907379109775No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4120.10154285995958001No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)