FastQCFastQC Report
Sun 21 May 2023
EGAF00007959028

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959028
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458388
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT23530.5133205930347217No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC21610.47143467979091946No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC16570.3614841575259387No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10900.23778981997783538No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10790.23539010619824255No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10500.22906358805204327No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)