FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959030

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959030
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438418
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT22880.5218763828127495No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC19390.44227198700783277No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC16760.38228357412332525No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11100.2531830353680734No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10770.24565597215442797No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10600.24177839413527727No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4400.10036084284860568No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)