FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007959031

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959031
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438418
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA46781.067018233740403No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA23210.5294034460263949No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA21240.4844691595691783No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20510.467818383369296No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11110.2534111281927293No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4750.10834409171156292No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4460.10172939979654119No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)