FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959032

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959032
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461691
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT23060.4994682590737095No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC21280.46091433447912133No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC16820.3643129279106589No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12230.26489578527629953No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11360.2460520131429896No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10260.22222655412386205No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4770.10331585411021656No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)