FastQCFastQC Report
Wed 31 May 2023
EGAF00007959035

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959035
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences385404
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA14910.3868667683781175No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6410.16631897956430136No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6200.1608701518406659No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5020.13025292939357141No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4550.1180579340121016No Hit
ATGTCCAACATGGACATCGATGGTATTAACA4520.11727953005158225No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4520.11727953005158225No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4200.10897655447270915No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4100.10638187460431131No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)