FastQCFastQC Report
Wed 31 May 2023
EGAF00007959037

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959037
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences386678
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA15360.397229736369796No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6200.16034012796176664No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6050.15646093131753033No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5280.1365477218771174No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5010.1295651679174921No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4570.11818619109439894No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4450.11508283377900994No Hit
ATGTCCAACATGGACATCGATGGTATTAACA4310.11146225024438938No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)