FastQCFastQC Report
Sun 21 May 2023
EGAF00007959039

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959039
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences375389
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG16850.44886770789767416No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13410.35722943400046353No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6260.16676034726643563No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6020.1603669793201186No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5250.13985492382568482No Hit
ATGTCCAACATGGACATCGATGGTATTAACA4480.11934286833125106No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4260.11348228104712713No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4180.11135115839835477No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA3770.10042915482339652No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)