FastQCFastQC Report
Sun 21 May 2023
EGAF00007959041

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959041
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467462
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24530.5247485357098545No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG16000.342273810491548No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13140.2810923668661838No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12340.2639786763416064No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9390.2008719425322272No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC9150.195737835374854No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9100.1946682297170679No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7320.1565902682998832No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7180.15359537245808216No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7060.15102831887939552No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6980.14931694982693783No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6600.14118794682776353No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC6290.1345563917494898No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6100.13049189024990265No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6070.129850126855231No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5700.12193504498761397No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5050.10803017143639483No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5020.10738840804172317No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)