FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007959043

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959043
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443876
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49821.1223855310942696No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG13910.3133758076579946No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12780.28791824743847383No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11080.24961926303742488No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC9880.22258468581315502No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9550.2151501770764808No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9020.20320990546909495No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6870.15477295460894486No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6790.1529706494606602No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6580.14823959844641296No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6580.14823959844641296No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC6140.13832692013084735No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5960.13427173354720687No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5810.13089241139417315No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5340.12030386864800079No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5330.12007858050446521No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4750.10701186817940146No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4450.10025322387333399No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)