FastQCFastQC Report
Sun 21 May 2023
EGAF00007959044

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959044
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468135
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG15820.3379367062919884No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12490.2668033793670629No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11100.2371110897497517No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC10130.21639057109594456No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9400.2007967787069969No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9230.19716534760272145No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT7170.15316094716267742No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6880.1469661529259722No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6780.14483001698228076No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6330.1352174052356692No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6140.13115874694265545No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT5910.1262456342721651No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5720.12218697597915132No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT5160.11022461469447915No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)