FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007959045

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959045
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468135
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23580.5037008555224455No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG15570.33259636643275975No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13990.2988454185224348No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12640.2700075832826001No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10500.22429427408760294No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC10330.22066284298332745No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9650.20613711856622557No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7550.16127826374870496No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7280.15551069670073803No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7220.15422901513452317No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7170.15316094716267742No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC7000.14952951605840195No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6180.132013201320132No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5930.12667286146090337No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5840.12475033911158107No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5660.12090529441293645No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4910.10488427483525051No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4800.1025345252971899No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4690.1001847757591293No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)