FastQCFastQC Report
Sun 21 May 2023
EGAF00007959055

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959055
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450348
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22840.5071633492321493No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10650.23648378587225877No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9460.2100597759954524No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8940.1985131498307975No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7800.17319939246982333No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5800.1287892918365353No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5200.1154662616465489No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4860.10791654453888994No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)