FastQCFastQC Report
Wed 31 May 2023
EGAF00007959056

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959056
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430102
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8750.20344011420546754No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8050.18716490506903014No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6030.14019930156102506No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5620.13066667906682602No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4820.11206644005375468No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4400.10230131457189225No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)