FastQCFastQC Report
Wed 31 May 2023
EGAF00007959058

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959058
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459224
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA24140.5256693901015627No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20180.43943696322491854No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA14750.3211940142501263No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12420.2704562479312928No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9770.2127502046931345No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6680.14546278069090465No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5610.12216260474191244No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5440.11846070762852115No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4710.10256432590631152No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)