FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007959059

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959059
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459224
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT52251.1377889657334983No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23980.5221852516419002No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23810.5184833545285089No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC15580.3392679825096249No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10730.23365503545110883No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8590.1870546835531244No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5400.11758967301360557No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4650.1012577739839381No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)