FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959060

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959060
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461200
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA22620.49045967042497834No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20160.4371205550737207No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA14320.3104943625325238No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12770.27688638334778837No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9530.20663486556808325No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7430.16110147441457068No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT6030.13074588031222897No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5550.12033824804856895No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5110.11079791847354727No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)