FastQCFastQC Report
Sun 21 May 2023
EGAF00007959061

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959061
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461200
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT51871.1246747614917607No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24410.5292714657415437No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23070.5002168256721595No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC15540.3369470945359931No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10600.22983521248915872No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9220.19991326973113616No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5820.1261925411968777No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4790.10385949696444059No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)