FastQCFastQC Report
Wed 31 May 2023
EGAF00007959065

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959065
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440029
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48881.1108358767263067No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17660.4013371845946517No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11500.2613464112592579No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7270.16521638346563522No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7150.1624892904785821No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7020.15953493974260788No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6460.14680850580302662No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6060.13771819584618286No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5860.133173040867761No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5400.12271918441739066No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5160.11726499844328443No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5030.1143106477073102No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4750.10794743073751958No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4420.10044792502312348No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)