FastQCFastQC Report
Wed 31 May 2023
EGAF00007959067

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959067
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464592
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22940.49376657368185417No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18910.4070237972242312No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12260.263887453938079No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7920.17047215621448497No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7780.16745875951372388No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7340.1579880841684747No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6960.14980886455212317No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6350.13667906464166407No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6120.13172848434755657No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5300.11407858938595584No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5110.10998897957778007No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4950.10654509763405311No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4830.10396218617625787No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4730.10180975996142852No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)