FastQCFastQC Report
Wed 31 May 2023
EGAF00007959069

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959069
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447918
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46431.036573658571435No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17760.39650114529891634No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12250.27348755799052504No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7660.17101344442509567No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7360.16431578994369506No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7050.15739488031291443No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6420.14332980590197314No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6140.13707866171933256No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5780.12904147634165183No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5090.1136368710344304No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5020.11207408498877026No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4850.1082787474493099No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4800.1071624717024098No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4630.10336713416294947No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)