FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959077

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959077
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences413930
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45001.087140337738265No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35760.8639141883893411No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13030.3147875244606576No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG10760.2599473340903051No Hit
GTCGCTGGCCTGATCGTGGGCGCAGCGACTA10510.25390766554731475No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8840.21356267968013917No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7970.1925446331505327No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA7430.17949894909767353No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6890.16645326504481434No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6760.16331263740245935No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6460.15606503515087092No Hit
GACGATGGCGAAACCACTACCGTAACCGTTA6400.15461551470055324No Hit
GAACCGATCTACGCTACCATCGACGACCTGG6310.1524412340250767No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG6210.15002536660788057No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5000.12079337085980721No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4920.1188606769260503No Hit
GCTGCTTCTAGCGATGCACTGGAAGCCCTGG4410.10653975309834997No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4400.10629816635663034No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)