FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007959078

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959078
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437508
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17620.4027354928367024No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14650.3348510198670653No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG12510.2859376285690776No Hit
GTCAGAGCTTTTGGTGGTGTTGATAGAGTTCAGAACCGCCTGCG11060.2527953774559551No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10020.22902438355412927No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9280.21211040712398405No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8050.1839966354900939No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7590.1734825420335171No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7110.16251131407882827No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6910.15793996909770794No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG6830.1561114311052598No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG6610.15108295162602742No Hit
CAGACCTTTGCCTTCATCCATGTCTTCGGTGGCCGGGGTGGTGT6600.1508543843769714No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG6310.1442259341543469No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5550.1268548232260896No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4650.10628377081104802No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4640.10605520356199202No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4380.10011245508653556No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)