FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007959085

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959085
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412197
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20610.5000036390366742No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18050.43789741313012953No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11840.28724129481776917No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9750.2365373838237542No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6940.1683660967935235No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6890.1671530845687863No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6010.14580406941341156No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5500.1334313447210921No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5240.12712368115245865No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5150.12494025914793168No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4500.10917110022634809No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)