FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959087

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959087
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences413116
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20630.499375478073955No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19420.4700858838679693No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11390.2757094859555186No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9340.22608661973876587No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7630.18469388743113316No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6650.16097173675190504No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5640.1365233977865781No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5280.12780913835339225No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5260.1273250128293264No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4990.120789318254437No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4440.10747586634262532No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4340.10505523872229591No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)