FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959089

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959089
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences395222
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39711.004751759770458No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18260.46201881474209433No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10670.2699748495782117No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9370.23708194381891695No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7610.1925500098678717No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7110.17989889226814296No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5960.15080132178876682No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5270.13334277950114115No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5060.12802931010925506No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4670.11816143838146662No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4610.11664330426949918No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)