FastQCFastQC Report
Sun 21 May 2023
EGAF00007959094

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959094
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510409
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG19800.387924194126671No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17880.3503073025749938No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG15610.3058331651675421No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT14800.28996353904417826No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG14390.2819307653274139No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG14190.27801233912411416No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14160.27742457519361924No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14130.27683681126312426No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG11500.22530950668973315No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG11470.22472174275923817No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11150.21845226083395866No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10470.20512961174273966No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA9830.19259064789218058No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG8800.1724107529451871No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA8520.1669249562605675No Hit
GATCGCCGGGGACGGAGTTTCCGGACGAGCAGGGGATTCCCAGG7510.14713690393390397No Hit
TTCTGCGGAGTTCGGTACGATTTCCAGCTGCGGAACTTTATATT7030.13773268104598468No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6770.13263872698169507No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6630.12989582863938529No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6580.12891622208856035No Hit
GATGAGCGGGTTGAACGCCTGTTTAACCTTTTTAGGGTGTTTCT6460.12656516636658052No Hit
TTTCGGGTGTTTCTGCTTCTGACGGGCTTCGCTGGAGGTACGTT6340.1242141106446007No Hit
TTCCTGGTTAACGCCGATCATCGGCTCTTTCTGCTGTGCGTCAA6320.12382226802427074No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6280.1230385827836108No Hit
CGGACGCTCCAGTGCGGTGTTGCTAGAGTGGCTCGGGATCGCCG5970.11696502216849625No Hit
AATCAGCGGGTTGAATGCCTGTTTTACCTTTTTCGGGTGTTTCT5710.11187106810420662No Hit
GATCAGCGGGTTGAATGCCTGTTTAACTTTCTTCGGGTGTTTCT5440.10658119272975203No Hit
CGGAACTTTGTATTTTTTCAGGCGCAGCAGCTGCTCCAGATAAC5410.10599342879925708No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5160.10109539604513243No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)