FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959095

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959095
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510409
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA30460.5967763107625453No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG22340.43768820690857724No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG21980.4306350397426378No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC21820.42750029877999796No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18140.3554012566392834No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG15550.3046576373065522No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA15220.2981922340711077No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG14640.28682879808153855No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14390.2819307653274139No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14180.27781641781394917No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14100.27624904733262934No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC13180.2582242867974507No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11340.22217476572709338No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG9260.18142313321277642No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT8920.17476180866716692No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7930.15536559896083338No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7840.1536023071693485No Hit
GAACCGGAAGACAAATCCCCGCGTGTTCAGC7620.14929203834571883No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCG7580.1485083531050589No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7460.14615729738307906No Hit
TCCATCTCTAGCAGCGAGGAAATCGTCCCAA7430.1455695334525841No Hit
CCGCCGCGCACTCCAACCTGGGAATCTCCGG6970.13655715318499478No Hit
TCCGAGCGTTATCTGGGTTACCTGGAACAGC6620.1296999073292203No Hit
CCGCCTCGTACCCCAACCTGGGAATCTCCGG6240.12225489754295087No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6040.11833647133965115No Hit
GCCCGCCCGGAAACTCCATCCCCGGCAATCC5730.1122629107245366No Hit
CCACCGCGTACCCCGACTTGGGAATCTCCGG5630.11030369762288675No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5430.10638527141958704No Hit
ATGGAAGACATCAAGCAGATGGAAGCAGAAT5310.10403421569760722No Hit
CTGGAAGAGGTCATCGTAGAAAAAACCAAAC5240.10266276652645231No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)