FastQCFastQC Report
Wed 31 May 2023
EGAF00007959097

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959097
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487225
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43390.8905536456462619No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28960.5943865770434604No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG21470.4406588331879522No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC21040.431833341885166No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG20610.4230078505823798No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16450.3376263533275181No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA14770.30314536405151626No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG14720.3021191441325876No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG14500.29760377648930164No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13930.28590486941351534No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12700.2606598594078711No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC12040.24711375647801323No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11030.22638411411565498No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG8990.184514341423367No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT8960.18389860947200984No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7710.1582431114987942No Hit
CCGCCGCGCACTCCAACCTGGGAATCTCCGG7030.14428652060136488No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7020.14408127661757916No Hit
TCCATCTCTAGCAGCGAGGAAATCGTCCCAA6940.14243932474729334No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6790.13936066499050745No Hit
GAACCGGAAGACAAATCCCCGCGTGTTCAGC6420.13176663759043564No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCG6320.12971419775257836No Hit
CCGCCTCGTACCCCAACCTGGGAATCTCCGG5630.11555236287136333No Hit
TCCGAGCGTTATCTGGGTTACCTGGAACAGC5540.1137051670172918No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5310.10898455539022013No Hit
GCCCGCCCGGAAACTCCATCCCCGGCAATCC5300.1087793114064344No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5210.10693211555236287No Hit
CCACCGCGTACCCCGACTTGGGAATCTCCGG5100.1046744317307199No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)