FastQCFastQC Report
Sun 21 May 2023
EGAF00007959100

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959100
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences554947
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11460.2065062068990372No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9290.16740337365550223No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG8470.15262718782153972No Hit
TGCCAGACCGCGGGTGGCACGTGGTTCGCGCGGCGGACGAGGCT8140.1466806740103109No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG7720.13911238370511056No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7620.13731040982292003No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7580.13658962027004382No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6710.120912447494986No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6690.1205520527185479No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6460.11640751278950963No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG5840.10523527471992822No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5810.10469468255527103No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)