FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959101

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959101
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences554947
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA18480.3330047734288139No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15060.2713772666578971No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11620.20938936511054207No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9550.17208850574919768No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9270.16704297887906414No Hit
GAACCGCGTGTACCGCGTGAACCTCGTGAAC8600.15496975386838743No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG8280.14920343744537767No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA8220.14812225311606333No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8130.14650047662209184No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7710.13893218631689153No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6740.12145303965964319No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6720.12109264488320506No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6650.11983126316567168No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6520.11748869711882397No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC5790.10433428777883293No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)