FastQCFastQC Report
Wed 31 May 2023
EGAF00007959102

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959102
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530548
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11060.20846370168203446No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8960.16888198617278738No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG7800.1470178004629176No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG7580.14287114455242503No Hit
TGCCAGACCGCGGGTGGCACGTGGTTCGCGCGGCGGACGAGGCT7420.13985539479933953No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6940.13080814554008308No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6640.1251536147530478No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6610.12458816167434426No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6410.1208184744829874No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6380.12025302140428386No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5930.11177122522373092No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5320.1002736792900925No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG5310.10008519493052467No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)