FastQCFastQC Report
Sun 21 May 2023
EGAF00007959104

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959104
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459325
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19240.41887552386654325No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15660.34093506776247756No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7860.17112066619496No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT6120.13323899199912914No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5870.12779622271811897No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5530.12039405649594513No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT5410.11778152724106025No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)