FastQCFastQC Report
Sun 21 May 2023
EGAF00007959107

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959107
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440731
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39470.89555760770175No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35340.801849654324293No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7380.1674490789166181No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5800.13159954711604133No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5260.11934717548799609No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5230.11866648817532689No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4970.11276719813219402No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4420.10028793073325908No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)