FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959108

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959108
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466229
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19400.4161045323220992No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15780.33846028453828486No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8180.17545026156674082No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5790.12418789907963682No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT5710.122472004100989No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5700.12225751722865802No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT5230.11217663422910201No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)