FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007959124

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959124
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466043
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15640.3355913510126748No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT8740.18753634321296533No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7460.16007106640374386No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6170.13239121711945034No Hit
ATCAGAGTGTTTCGGCAGGATCAGGGTGTTCGGGTTGGACTGGA6000.1287434850432256No Hit
ACGAGAGCTGGAACGAGAGCTGGCCTGGGAACCGCCACGAGAAC5180.11114854208731813No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT5090.10921738981166974No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA4920.10556965773544501No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)