FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959125

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959125
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466043
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49391.0597734543808188No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17050.3658460699978328No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15860.34031194546425975No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG8820.18925292301354166No Hit
TCCAGCGAACGTTTCCAAACTCGTTACCGTA6210.1332495070197385No Hit
GAAGGCGCACTGAACACCCCGAAAGACCACA5860.12573947039221703No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5040.10814452743630953No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC4980.10685709258587726No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4690.10063449080878803No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)