FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959127

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959127
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492381
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24430.4961604936014997No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19030.38648932432404987No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16790.34099609854970037No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG9320.1892843143825615No Hit
TCCAGCGAACGTTTCCAAACTCGTTACCGTA6390.12977755031164892No Hit
GAAGGCGCACTGAACACCCCGAAAGACCACA6300.1279496974903581No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5390.10946807451952857No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC5340.10845260072992256No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)