FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959128

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959128
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471762
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15440.3272836726993696No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT8690.1842030515386996No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8010.1697890037773284No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6960.1475320182634464No Hit
ATCAGAGTGTTTCGGCAGGATCAGGGTGTTCGGGTTGGACTGGA6000.12718277436504No Hit
ACGAGAGCTGGAACGAGAGCTGGCCTGGGAACCGCCACGAGAAC5720.1212475782280048No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA5510.1167961811252284No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT5060.10725747304785041No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)