FastQCFastQC Report
Sun 21 May 2023
EGAF00007959135

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959135
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459988
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47141.0248093428524223No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9390.204135760063306No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6160.1339165369531379No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5360.11652477890727585No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4610.10022000573928017No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)