FastQCFastQC Report
Wed 31 May 2023
EGAF00007959136

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959136
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430481
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10020.23276288616686916No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9590.2227740597145983No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA9060.21046225036645055No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8800.20442249483717054No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7640.17747589324499802No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6920.1607504163946841No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6760.15703364376128098No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6570.1526199762591148No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5840.13566220111921318No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5190.12056281229601307No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5170.12009821571683768No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4840.11243237216044379No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4460.10360503715611143No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)